Assay Details
Target Gene Details
Entrez Gene ID: | 10533 |
Gene Name: | autophagy related 7 |
Gene Aliases: |
APG7-LIKE, APG7L, GSA7 |
Location: |
Chr.3:11272324-11564704 on Build GRCh38 |
Assay Gene Location: | Within Intron 27 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
ATG7 | XM_017005547.1 | XP_016861036.1 | ||
XM_017005554.1 | XP_016861043.1 |
Target Gene Details
Entrez Gene ID: | 9686 |
Gene Name: | vestigial like family member 4 |
Gene Aliases: |
VGL-4 |
Location: |
Chr.3:11556067-11720768 on Build GRCh38 |
Assay Gene Location: | Within Exon 14 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
VGLL4 | NM_001128219.2 | 5 | 1386 | NP_001121691.1 |
NM_001128220.2 | 4 | 761 | NP_001121692.1 | |
NM_001128221.2 | 4 | 975 | NP_001121693.1 | |
NM_001284390.1 | 7 | 1430 | NP_001271319.1 | |
NM_001284391.1 | 5 | 1103 | NP_001271320.1 | |
NM_014667.3 | 6 | 1297 | NP_055482.2 | |
XM_011534267.2 | 7 | 1072 | XP_011532569.1 | |
XM_011534268.1 | 5 | 1400 | XP_011532570.1 | |
XM_011534269.1 | 5 | 1094 | XP_011532571.1 | |
XM_017007541.1 | 7 | 1095 | XP_016863030.1 | |
XM_017007542.1 | 6 | 1284 | XP_016863031.1 | |
AK126479.1 | 2 | 2020 | ||
AK130542.1 | 6 | 1092 | BAC85375.1 | |
AK300344.1 | 5 | 1103 | ||
AK307708.1 | 4 | 726 | ||
AK308761.1 | ||||
BC001514.2 | AAH01514.2 | |||
BC003038.1 | AAH03038.1 | |||
D50911.3 | 6 | 1045 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv955314 | Chr.3:11552827 - 11568726 on Build GRCh38 | Deletion | VGLL4 ATG7 |
nsv436362 | Chr.3:10048344 - 11860564 on Build GRCh38 | Deletion | VGLL4 HRH1 LINC00852 ATG7 GHRL SLC6A1 SEC13 VHL SLC6A11 IRAK2 ATP2B2-IT2 TAMM41 ATP2B2 SLC6A1-AS1 FANCD2OS LOC101927467 MIR885 GHRLOS TATDN2 BRK1 LINC00606 FANCD2 MIR378B |
nsv517831 | Chr.3:11541780 - 11576994 on Build GRCh38 | Loss | VGLL4 ATG7 |
esv2677845 | Chr.3:11489013 - 11864643 on Build GRCh38 | Deletion | VGLL4 ATG7 TAMM41 |
dgv762e201 | Chr.3:10008967 - 11913136 on Build GRCh38 | Deletion | VGLL4 HRH1 LINC00852 CIDECP EMC3 SLC6A11 ATP2B2-IT2 FANCD2OS MIR885 LINC00606 MIR378B ATG7 GHRL SLC6A1 SEC13 VHL IRAK2 TAMM41 ATP2B2 LOC401052 SLC6A1-AS1 FANCD2P2 LOC101927467 GHRLOS TATDN2 BRK1 FANCD2 |
nsv1121603 | Chr.3:10071433 - 11889279 on Build GRCh38 | Deletion | VGLL4 HRH1 LINC00852 ATG7 GHRL SLC6A1 SEC13 VHL SLC6A11 IRAK2 ATP2B2-IT2 TAMM41 ATP2B2 SLC6A1-AS1 FANCD2OS FANCD2P2 LOC101927467 MIR885 GHRLOS TATDN2 BRK1 LINC00606 FANCD2 MIR378B |
nsv436869 | Chr.3:10064456 - 11877985 on Build GRCh38 | Insertion | VGLL4 HRH1 LINC00852 ATG7 GHRL SLC6A1 SEC13 VHL SLC6A11 IRAK2 ATP2B2-IT2 TAMM41 ATP2B2 SLC6A1-AS1 FANCD2OS FANCD2P2 LOC101927467 MIR885 GHRLOS TATDN2 BRK1 LINC00606 FANCD2 MIR378B |
nsv1073204 | Chr.3:9996548 - 11875005 on Build GRCh38 | Deletion | VGLL4 HRH1 LINC00852 CIDECP EMC3 SLC6A11 ATP2B2-IT2 FANCD2OS MIR885 LINC00606 MIR378B ATG7 GHRL SLC6A1 SEC13 EMC3-AS1 VHL IRAK2 TAMM41 ATP2B2 LOC401052 SLC6A1-AS1 FANCD2P2 LOC101927467 GHRLOS TATDN2 BRK1 FANCD2 |
More Information
Set Membership: |
Intragenic Exonic Intronic Non-exonic DGV Variation |