Assay Details
Target Gene Details
Entrez Gene ID: | 150572 |
Gene Name: | SET and MYND domain containing 1 |
Gene Aliases: |
BOP, KMT3D, ZMYND18, ZMYND22 |
Location: |
Chr.2:88067780-88113384 on Build GRCh38 |
Assay Gene Location: | Within Exon 3 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
SMYD1 | NM_198274.3 | 3 | 497 | NP_938015.1 |
XM_005264156.2 | 3 | 452 | XP_005264213.1 | |
AK091724.1 | 3 | 415 | BAC03732.1 | |
AL832035.1 | 3 | 414 | CAI46139.1 | |
AY518933.1 | 3 | 394 | AAT44535.1 | |
BC126191.1 | 3 | 497 | ||
BX647878.1 | 3 | 416 | CAI46077.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
dgv61n16 | Chr.2:87343737 - 90254660 on Build GRCh38 | Deletion | LOC101927050 IGKV1D-13 MIR4780 FOXI3 LOC101928371 LOC730268 IGKV2-24 KRCC1 IGKV2-29 LOC107985911 MIR4435-1 ANKRD36BP2 SMYD1 IGKV1D-8 IGKV3-20 LINC00152 IGKV1-5 RGPD2 RPIA IGKV3D-15 PLGLB2 MIR4436A LOC101928403 FABP1 THNSL2 IGKV2-26 EIF2AK3 TEX37 IGKC IGK |
dgv6947n54 | Chr.2:87815738 - 88850700 on Build GRCh38 | Gain | MIR4780 RGPD2 RPIA FOXI3 LOC101928371 MIR4436A KRCC1 LOC101928403 FABP1 THNSL2 EIF2AK3 TEX37 ANKRD36BP2 SMYD1 |
nsv1072005 | Chr.2:87360367 - 90256528 on Build GRCh38 | Deletion | LOC101927050 IGKV1D-13 MIR4780 FOXI3 LOC101928371 LOC730268 IGKV2-24 KRCC1 IGKV2-29 LOC107985911 MIR4435-1 ANKRD36BP2 SMYD1 IGKV1D-8 IGKV3-20 LINC00152 IGKV1-5 RGPD2 RPIA IGKV3D-15 PLGLB2 MIR4436A LOC101928403 FABP1 THNSL2 IGKV2-26 EIF2AK3 TEX37 IGKC IGK |
nsv834289 | Chr.2:88083076 - 88251327 on Build GRCh38 | Gain | FABP1 THNSL2 SMYD1 |
nsv1130752 | Chr.2:87360364 - 90256525 on Build GRCh38 | Deletion | LOC101927050 IGKV1D-13 MIR4780 FOXI3 LOC101928371 LOC730268 IGKV2-24 KRCC1 IGKV2-29 LOC107985911 MIR4435-1 ANKRD36BP2 SMYD1 IGKV1D-8 IGKV3-20 LINC00152 IGKV1-5 RGPD2 RPIA IGKV3D-15 PLGLB2 MIR4436A LOC101928403 FABP1 THNSL2 IGKV2-26 EIF2AK3 TEX37 IGKC IGK |
nsv582384 | Chr.2:87987149 - 88773214 on Build GRCh38 | Loss | MIR4780 RGPD2 RPIA FOXI3 LOC101928371 KRCC1 LOC101928403 FABP1 THNSL2 EIF2AK3 TEX37 ANKRD36BP2 SMYD1 |
nsv582386 | Chr.2:88035188 - 89208087 on Build GRCh38 | Loss | IGKV3-20 IGKV1-5 MIR4780 RPIA FOXI3 LOC101928371 IGKV2-24 MIR4436A KRCC1 LOC101928403 FABP1 THNSL2 IGKV2-26 EIF2AK3 TEX37 IGKC IGK ANKRD36BP2 SMYD1 |
nsv582383 | Chr.2:87915816 - 88527080 on Build GRCh38 | Gain | KRCC1 FABP1 MIR4780 RGPD2 THNSL2 TEX37 FOXI3 SMYD1 |
More Information
Set Membership: |
Intragenic Exonic DGV Variation |