Assay Details
Target Gene Details
Entrez Gene ID: | 78999 |
Gene Name: | leucine rich repeat and fibronectin type III domain containing 4 |
Gene Aliases: |
FIGLER6, SALM3, SALM3. |
Location: |
Chr.11:66857087-66860475 on Build GRCh38 |
Assay Gene Location: | Within Exon 3 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
LRFN4 | NM_024036.4 | 2 | 1807 | NP_076941.2 |
XM_005274239.3 | 3 | 1687 | XP_005274296.1 | |
AB209005.1 | 2 | 1428 | BAD92242.1 | |
BC000207.1 | 2 | 544 | AAH00207.2 | |
BC007718.2 | AAH07718.1 | |||
BC014040.2 | 2 | 551 | AAH14040.2 | |
BC015581.2 | 2 | 1710 | AAH15581.2 | |
BC027475.1 | 2 | 1146 | AAH27475.2 | |
BC071866.1 | AAH71866.1 | |||
BC094813.1 | 2 | 885 | AAH94813.1 |
Target Gene Details
Entrez Gene ID: | 5091 |
Gene Name: | pyruvate carboxylase |
Gene Aliases: |
PCB |
Location: |
Chr.11:66848522-66958418 on Build GRCh38 |
Assay Gene Location: | Within Intron 18 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
PC | NM_000920.3 | NP_000911.2 | ||
NM_001040716.1 | NP_001035806.1 | |||
NM_022172.2 | NP_071504.2 | |||
XM_005274031.4 | XP_005274088.1 | |||
XM_005274032.4 | XP_005274089.1 | |||
XM_006718578.3 | XP_006718641.1 | |||
XM_011545086.2 | XP_011543388.1 | |||
XM_017017868.1 | XP_016873357.1 | |||
XM_017017869.1 | XP_016873358.1 | |||
XM_017017870.1 | XP_016873359.1 | |||
XM_017017871.1 | XP_016873360.1 | |||
XM_017017872.1 | XP_016873361.1 | |||
BC011617.2 | AAH11617.1 | |||
S72370.1 | AAB31500.1 | |||
U04641.1 | AAA99537.1 | |||
U30891.1 | AAA82937.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv555226 | Chr.11:66812101 - 67077891 on Build GRCh38 | Gain | SYT12 C11orf86 MIR3163 LRFN4 PC MIR6860 C11orf80 RCE1 RHOD |
nsv951020 | Chr.11:66843130 - 66869629 on Build GRCh38 | Deletion | LRFN4 PC C11orf80 RCE1 |
nsv508638 | Chr.11:66774182 - 66876163 on Build GRCh38 | Deletion | LRFN4 PC C11orf80 RCE1 |
nsv555225 | Chr.11:66700998 - 66866926 on Build GRCh38 | Loss | LRFN4 PC C11orf80 RCE1 SPTBN2 |
More Information
Additional Information:
For this assay, SNP(s) [rs111498329] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Exonic Intronic Non-exonic DGV Variation |