Assay Details
Target Gene Details
Entrez Gene ID: | 26168 |
Gene Name: | SUMO1/sentrin/SMT3 specific peptidase 3 |
Gene Aliases: |
SMT3IP1, SSP3, Ulp1 |
Location: |
Chr.17:7561992-7571969 on Build GRCh38 |
Assay Gene Location: | Within Exon 8 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
SENP3 | NM_015670.5 | 8 | 1707 | NP_056485.2 |
AF199459.1 | 8 | 1494 | AAL25652.1 | |
AL050283.1 | 7 | 1018 | CAB43384.2 | |
AL834294.1 | 8 | 1501 | CAD38967.1 | |
AY008763.1 | 8 | 1475 | AAG33252.1 | |
BC048306.1 | 7 | 945 | AAH48306.1 | |
BC080658.1 | 8 | 1689 | AAH80658.1 |
Target Gene Details
Entrez Gene ID: | 100533955 |
Gene Name: | SENP3-EIF4A1 readthrough (NMD candidate) |
Gene Aliases: |
- |
Location: |
Chr.17:7561992-7579006 on Build GRCh38 |
Assay Gene Location: | Within Exon 8 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
SENP3-EIF4A1 | NR_037926.1 | 8 | 1707 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
esv2422288 | Chr.17:6789933 - 7646709 on Build GRCh38 | Deletion | SNORA48 LOC107983988 MIR324 RNASEK-C17orf49 NEURL4 MIR497HG SENP3 RNASEK TMEM95 EIF4A1 FGF11 KCTD11 MPDU1 CLDN7 ZBTB4 ALOX12 GABARAP DVL2 FXR2 TMEM102 MIR497 ELP5 TNFSF12-TNFSF13 MIR195 SHBG ALOX12-AS1 ASGR2 C17orf49 CTDNEP1 EIF5A SLC16A13 ATP1B2 SOX15 SLC2A4 TEKT1 CD68 GPS2 ASGR1 ACADVL POLR2A BCL6B PHF23 TNK1 DLG4 CHRNB1 SAT2 LOC100996842 SENP3-EIF4A1 SLC35G6 TNFSF12 PLSCR3 C17orf74 YBX2 TMEM256-PLSCR3 TMEM256 SLC16A11 SNORA67 ACAP1 SNORD10 CLEC10A TNFSF13 ALOX12P2 FBXO39 SPEM1 NLGN2 |
nsv574322 | Chr.17:7010333 - 7689462 on Build GRCh38 | Loss | SNORA48 LOC107983988 MIR324 RNASEK-C17orf49 NEURL4 MIR497HG SENP3 RNASEK TMEM95 EIF4A1 FGF11 KCTD11 MPDU1 CLDN7 ZBTB4 ALOX12 GABARAP DVL2 FXR2 TMEM102 MIR497 ELP5 TNFSF12-TNFSF13 MIR195 SHBG ALOX12-AS1 ASGR2 C17orf49 CTDNEP1 EIF5A SLC16A13 ATP1B2 SOX15 SLC2A4 WRAP53 CD68 GPS2 ASGR1 ACADVL POLR2A BCL6B PHF23 TNK1 DLG4 CHRNB1 SAT2 LOC100996842 SENP3-EIF4A1 SLC35G6 TNFSF12 PLSCR3 TP53 C17orf74 YBX2 TMEM256-PLSCR3 TMEM256 SLC16A11 SNORA67 ACAP1 SNORD10 CLEC10A TNFSF13 SPEM1 NLGN2 |
More Information
Set Membership: |
Intragenic Exonic DGV Variation |