Assay Details
Target Gene Details
Entrez Gene ID: | 79680 |
Gene Name: | chromosome 22 open reading frame 29 |
Gene Aliases: |
BOP |
Location: |
Chr.22:19846138-19854848 on Build GRCh38 |
Assay Gene Location: | Within Exon 3 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
C22orf29 | NM_024627.5 | 3 | 1429 | NP_078903.3 |
AK024778.1 | 1 | 805 | BAB14998.1 | |
AK225088.1 | 1 | 805 | ||
AK291262.1 | 3 | 1397 | ||
AL832509.1 | 3 | 1318 | ||
BC011679.2 | 1 | 936 | AAH11679.2 | |
BX640785.1 | 2 | 1518 | CAE45875.1 | |
BX640969.1 | 3 | 1398 | CAE45984.1 | |
BX640998.1 | 3 | 1398 | CAE46001.1 |
Target Gene Details
Entrez Gene ID: | 54584 |
Gene Name: | G protein subunit beta 1 like |
Gene Aliases: |
DGCRK3, FKSG1, GY2, WDR14, WDVCF |
Location: |
Chr.22:19788411-19854939 on Build GRCh38 |
Assay Gene Location: | Within Intron 2 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
GNB1L | NM_053004.2 | NP_443730.1 | ||
AB051432.1 | ||||
AF238328.1 | AAG36826.1 | |||
AF301895.1 | AAG53933.1 | |||
AY007378.1 | AAG12162.1 | |||
BC012060.1 | AAH12060.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv834129 | Chr.22:19705617 - 19919068 on Build GRCh38 | Loss | SEPT5 GP1BB SEPT5-GP1BB TBX1 GNB1L TXNRD2 C22orf29 |
nsv953024 | Chr.22:19842078 - 19854877 on Build GRCh38 | Deletion | GNB1L C22orf29 |
esv3893434 | Chr.22:19470889 - 20343372 on Build GRCh38 | Gain | DGCR6L RANBP1 UFD1L TANGO2 GNB1L MIR185 LINC00896 LOC440792 TBX1 ZDHHC8 MIR3618 RTN4R C22orf29 DGCR8 CCDC188 ARVCF MIR4761 CLDN5 MIR1306 TRMT2A COMT MIR6816 LOC284865 LINC00895 SEPT5 LOC101927859 GP1BB SEPT5-GP1BB MIR1286 TXNRD2 CDC45 |
nsv828939 | Chr.22:19696032 - 20324465 on Build GRCh38 | Loss | DGCR6L RANBP1 TANGO2 GNB1L MIR185 LINC00896 LOC440792 TBX1 ZDHHC8 MIR3618 RTN4R C22orf29 DGCR8 CCDC188 ARVCF MIR4761 MIR1306 TRMT2A COMT MIR6816 LOC284865 SEPT5 GP1BB SEPT5-GP1BB MIR1286 TXNRD2 |
nsv828938 | Chr.22:19691069 - 20324465 on Build GRCh38 | Gain | DGCR6L RANBP1 TANGO2 GNB1L MIR185 LINC00896 LOC440792 TBX1 ZDHHC8 MIR3618 RTN4R C22orf29 DGCR8 CCDC188 ARVCF MIR4761 MIR1306 TRMT2A COMT MIR6816 LOC284865 SEPT5 GP1BB SEPT5-GP1BB MIR1286 TXNRD2 |
nsv834130 | Chr.22:19837923 - 19940567 on Build GRCh38 | Loss | GNB1L TXNRD2 C22orf29 |
esv3568260 | Chr.22:19777375 - 19881883 on Build GRCh38 | Loss | TBX1 GNB1L TXNRD2 C22orf29 |
esv3647279 | Chr.22:19719848 - 19878980 on Build GRCh38 | Gain | SEPT5 GP1BB SEPT5-GP1BB TBX1 GNB1L TXNRD2 C22orf29 |
dgv7983n54 | Chr.22:19762002 - 20321870 on Build GRCh38 | Gain | DGCR6L DGCR8 CCDC188 ARVCF MIR4761 RANBP1 MIR1306 TANGO2 TRMT2A COMT MIR6816 GNB1L MIR185 LOC284865 LINC00896 LOC440792 TBX1 MIR1286 ZDHHC8 MIR3618 TXNRD2 RTN4R C22orf29 |
esv3575418 | Chr.22:18161776 - 19963846 on Build GRCh38 | Gain | LOC102725072 DGCR5 LOC642643 UFD1L GNB1L USP18 TMEM191B SLC25A1 PRODH PI4KAP1 GSC2 DGCR6 TBX1 DGCR9 TSSK2 FAM230A LOC100996432 C22orf29 DGCR14 LOC729461 DGCR2 DGCR11 MIR4761 CLDN5 C22orf39 LOC100996415 COMT DGCR10 MRPL40 LINC00895 CLTCL1 SEPT5 LINC01311 HIRA GP1BB GGT3P LOC100996401 SEPT5-GP1BB RIMBP3 TXNRD2 CDC45 |
More Information
Additional Information:
For this assay, SNP(s) [rs77448872,rs78844806] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Exonic Intronic Non-exonic DGV Variation |