Assay Details
Target Gene Details
Entrez Gene ID: | 26168 |
Gene Name: | SUMO1/sentrin/SMT3 specific peptidase 3 |
Gene Aliases: |
SMT3IP1, SSP3, Ulp1 |
Location: |
Chr.17:7561992-7571969 on Build GRCh38 |
Assay Gene Location: | Within Exon 1 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
SENP3 | NM_015670.5 | 1 | 140 | NP_056485.2 |
AL557688.3 | 1 | 180 | ||
BC080658.1 | 1 | 122 | AAH80658.1 | |
BQ956948.1 | 1 | 140 | ||
CX165088.1 | 1 | 76 |
Target Gene Details
Entrez Gene ID: | 100533955 |
Gene Name: | SENP3-EIF4A1 readthrough (NMD candidate) |
Gene Aliases: |
- |
Location: |
Chr.17:7561992-7579006 on Build GRCh38 |
Assay Gene Location: | Within Exon 1 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
SENP3-EIF4A1 | NR_037926.1 | 1 | 140 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
esv2422288 | Chr.17:6789933 - 7646709 on Build GRCh38 | Deletion | MIR497HG TNFSF12-TNFSF13 SNORD10 TMEM95 SENP3-EIF4A1 CD68 CLDN7 ZBTB4 MIR497 TNFSF13 ALOX12-AS1 BCL6B LOC107983988 LOC100996842 TMEM256 SENP3 GPS2 DVL2 SPEM1 SHBG NEURL4 EIF5A C17orf49 ELP5 SLC35G6 ASGR2 SLC16A11 MIR324 ATP1B2 YBX2 SAT2 TEKT1 TMEM256-PLSCR3 SLC2A4 TNFSF12 SNORA48 MPDU1 SNORA67 DLG4 ALOX12P2 TMEM102 EIF4A1 NLGN2 PHF23 SOX15 SLC16A13 FBXO39 CTDNEP1 POLR2A FGF11 ASGR1 RNASEK-C17orf49 ACAP1 KCTD11 ALOX12 CLEC10A PLSCR3 TNK1 C17orf74 RNASEK ACADVL CHRNB1 MIR195 GABARAP FXR2 |
nsv574322 | Chr.17:7010333 - 7689462 on Build GRCh38 | Loss | MIR497HG TNFSF12-TNFSF13 SNORD10 TMEM95 SENP3-EIF4A1 CD68 CLDN7 ZBTB4 MIR497 TNFSF13 ALOX12-AS1 BCL6B LOC107983988 LOC100996842 TMEM256 SENP3 GPS2 DVL2 SPEM1 SHBG NEURL4 EIF5A C17orf49 ELP5 SLC35G6 ASGR2 SLC16A11 MIR324 ATP1B2 YBX2 SAT2 TMEM256-PLSCR3 WRAP53 SLC2A4 TNFSF12 SNORA48 MPDU1 TP53 SNORA67 DLG4 TMEM102 EIF4A1 NLGN2 PHF23 SOX15 SLC16A13 CTDNEP1 POLR2A FGF11 ASGR1 RNASEK-C17orf49 ACAP1 KCTD11 ALOX12 CLEC10A PLSCR3 TNK1 C17orf74 RNASEK ACADVL CHRNB1 MIR195 GABARAP FXR2 |
More Information
Set Membership: |
Intragenic Exonic DGV Variation |