Assay Details
Target Gene Details
Entrez Gene ID: | 8243 |
Gene Name: | structural maintenance of chromosomes 1A |
Gene Aliases: |
CDLS2, DXS423E, SB1.8, SMC1, SMC1L1, SMC1alpha, SMCB |
Location: |
Chr.X:53374149-53422728 on Build GRCh38 |
Assay Gene Location: | Overlaps Intron 24 - Exon 25 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
SMC1A | NM_001281463.1 | NP_001268392.1 | ||
NM_006306.3 | NP_006297.2 | |||
BC112127.1 | AAI12128.1 | |||
D80000.2 | BAA11495.2 | |||
S78271.1 | AAB34405.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
esv2740175 | Chr.X:52862926 - 55652533 on Build GRCh38 | Deletion | MIR4536-1 SNORA11 WNK3 APEX2 MTRNR2L10 USP51 RIBC1 MAGED2 XAGE3 MIR6895 KDM5C MIRLET7F2 GNL3L TRO PAGE2 GPR173 PAGE3 PFKFB1 MIR6894 TSPYL2 MIR4536-2 ALAS2 FOXR2 SNORA109 KANTR FAM156B PAGE2B HUWE1 MAGEH1 MIR98 TSR2 MIR6857 PHF8 SMC1A HSD17B10 LOC100421746 FAM104B FAM120C IQSEC2 PAGE5 FGD1 ITIH6 FAM156A |
nsv435891 | Chr.X:52861979 - 55653313 on Build GRCh38 | Deletion | MIR4536-1 SNORA11 WNK3 APEX2 MTRNR2L10 USP51 RIBC1 MAGED2 XAGE3 MIR6895 KDM5C MIRLET7F2 GNL3L TRO PAGE2 GPR173 PAGE3 PFKFB1 MIR6894 TSPYL2 MIR4536-2 ALAS2 FOXR2 SNORA109 KANTR FAM156B PAGE2B HUWE1 MAGEH1 MIR98 TSR2 MIR6857 PHF8 SMC1A HSD17B10 LOC100421746 FAM104B FAM120C IQSEC2 PAGE5 FGD1 ITIH6 FAM156A |
More Information
Set Membership: |
Intragenic Non-exonic DGV Variation |