Assay Details
Target Gene Details
Entrez Gene ID: | 148979 |
Gene Name: | GLIS family zinc finger 1 |
Gene Aliases: |
- |
Location: |
Chr.1:53506233-53739171 on Build GRCh38 |
Assay Gene Location: | Within Exon 14 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
GLIS1 | NM_147193.2 | 10 | 2716 | NP_671726.2 |
XM_017000408.1 | 11 | 2783 | XP_016855897.1 | |
XM_017000409.1 | 11 | 2771 | XP_016855898.1 | |
XM_017000410.1 | 11 | 2897 | XP_016855899.1 | |
XM_017000411.1 | 9 | 2436 | XP_016855900.1 | |
AK090634.1 | 10 | 2715 | BAC03494.1 | |
AK093474.1 | 8 | 2085 | BAC04178.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv527806 | Chr.1:53499393 - 53510515 on Build GRCh38 | Loss | GLIS1 |
nsv522165 | Chr.1:53506376 - 53539387 on Build GRCh38 | Loss | GLIS1 |
nsv428443 | Chr.1:53452879 - 53563563 on Build GRCh38 | Gain | DMRTB1 GLIS1 |
nsv509269 | Chr.1:53296636 - 53583096 on Build GRCh38 | Insertion | LRP8 SLC25A3P1 DMRTB1 LOC105378732 GLIS1 |
nsv888 | Chr.1:53471532 - 53508621 on Build GRCh38 | Deletion | GLIS1 |
nsv829882 | Chr.1:53449992 - 53629940 on Build GRCh38 | Loss | DMRTB1 GLIS1 |
More Information
Additional Information:
For this assay, SNP(s) [rs72893308] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Exonic DGV Variation |