Assay Details
Target Gene Details
Entrez Gene ID: | 63935 |
Gene Name: | PDX1 C-terminal inhibiting factor 1 |
Gene Aliases: |
C20orf67, PPP1R121 |
Location: |
Chr.20:45934674-45948023 on Build GRCh38 |
Assay Gene Location: | Overlaps Intron 2 - Exon 3 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
PCIF1 | NM_022104.3 | NP_071387.1 | ||
XM_011528980.2 | XP_011527282.1 | |||
XM_011528981.2 | XP_011527283.1 | |||
XM_017028013.1 | XP_016883502.1 | |||
XM_017028014.1 | XP_016883503.1 | |||
AB050014.1 | BAC45238.1 | |||
AK299435.1 | ||||
BC010005.2 | AAH10005.1 | |||
BC013365.2 | AAH13365.1 | |||
BQ684226.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv833991 | Chr.20:45885631 - 46068708 on Build GRCh38 | Loss | NEURL2 PLTP PCIF1 ZNF335 MMP9 LOC107985388 NCOA5 SLC12A5 CTSA SPATA25 |
nsv517296 | Chr.20:45854586 - 45965936 on Build GRCh38 | Loss | NEURL2 PLTP ACOT8 PCIF1 ZNF335 ZSWIM1 LOC107985388 ZSWIM3 CTSA SPATA25 |
nsv833990 | Chr.20:45771510 - 45946844 on Build GRCh38 | Loss | NEURL2 TNNC2 PCIF1 WFDC3 ZSWIM1 LOC107985388 DNTTIP1 UBE2C SNX21 PLTP ACOT8 ZSWIM3 CTSA SPATA25 |
More Information
Additional Information:
For this assay, SNP(s) [rs117600934] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Non-exonic DGV Variation |