Assay Details
Target Gene Details
Entrez Gene ID: | 284415 |
Gene Name: | V-set and transmembrane domain containing 1 |
Gene Aliases: |
SIRL-1, SIRL1, UNQ3033 |
Location: |
Chr.19:54040825-54063966 on Build GRCh38 |
Assay Gene Location: | Within Exon 1 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
VSTM1 | NM_001288791.1 | NP_001275720.1 | ||
NM_001288792.1 | NP_001275721.1 | |||
NM_001288793.1 | NP_001275722.1 | |||
NM_198481.3 | NP_940883.2 | |||
NR_110142.1 | ||||
XM_011526845.1 | 1 | 75 | XP_011525147.1 | |
XM_011526846.1 | 1 | 75 | XP_011525148.1 | |
XM_011526847.1 | 1 | 75 | XP_011525149.1 | |
XM_011526848.1 | 1 | 75 | XP_011525150.1 | |
XM_011526849.1 | 1 | 75 | XP_011525151.1 | |
XM_017026666.1 | 1 | 75 | XP_016882155.1 | |
AY358542.1 | AAQ88906.1 | |||
BC100943.2 | AAI00944.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv510773 | Chr.19:54017180 - 54132236 on Build GRCh38 | Deletion | NDUFA3 TARM1 PRPF31 VSTM1 TFPT OSCAR |
nsv580110 | Chr.19:53961144 - 54093354 on Build GRCh38 | Gain | CACNG8 TARM1 MIR935 CACNG6 VSTM1 |
nsv2542 | Chr.19:54050737 - 54097924 on Build GRCh38 | Deletion | TARM1 VSTM1 OSCAR |
nsv1063127 | Chr.19:53926876 - 54068977 on Build GRCh38 | Gain | CACNG7 CACNG8 MIR935 CACNG6 VSTM1 |
esv3644780 | Chr.19:54057724 - 54066399 on Build GRCh38 | Gain | VSTM1 |
esv2718812 | Chr.19:53184636 - 54322450 on Build GRCh38 | Deletion | CACNG7 MIR518C MIR373 ZNF331 RPS9 MIR517B LENG1 MIR518F MIR519B TMC4 DPRX MIR522 TPM3P9 TFPT MIR526A2 MIR524 OSCAR MIR517A MIR512-2 LILRB3 MIR518B MIR519A1 ZNF665 BIRC8 MIR1323 MBOAT7 MIR520A MIR520C MIR518E FAM90A27P VSTM1 MIR527 ZNF761 MIR526B ZNF525 NDUFA3 LILRA5 MIR519D ZNF765 MIR520H MIR516A1 MIR515-1 MIR526A1 MIR525 VN1R2 MIR498 ZNF813 MIR1283-1 MYADM ZNF818P VN1R4 MIR935 MIR520F MIR512-1 MIR371A MIR520B PRKCG MIR517C MIR516A2 MIR371B MIR521-1 MIR518A2 NLRP12 MIR523 MIR521-2 TSEN34 ZNF677 CACNG6 MIR372 MIR4752 MIR520G LILRB5 MIR519E MIR518D MIR519C LOC284379 MIR1283-2 MIR516B2 MIR515-2 MIR520E LOC105372457 MIR518A1 CACNG8 TARM1 PRPF31 LILRB2 MIR516B1 CNOT3 MIR519A2 LILRA6 MIR520D ZNF845 |
nsv833877 | Chr.19:53951529 - 54117323 on Build GRCh38 | Loss | CACNG8 NDUFA3 TARM1 PRPF31 MIR935 CACNG6 VSTM1 TFPT OSCAR |
More Information
Set Membership: |
Intragenic Exonic DGV Variation |