Assay Details
Target Gene Details
Entrez Gene ID: | 83903 |
Gene Name: | germ cell associated 2, haspin |
Gene Aliases: |
HASPIN |
Location: |
Chr.17:3723903-3726699 on Build GRCh38 |
Assay Gene Location: | Within Exon 1 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
GSG2 | NM_031965.2 | 1 | 2542 | NP_114171.2 |
AB039834.3 | 1 | 2539 | ||
AF289865.1 | 1 | 2538 | AAK30300.1 | |
AK056691.1 | 2 | 1428 | BAB71255.1 | |
AK292715.1 | 1 | 2528 | ||
AK310546.1 | ||||
BC047457.1 | 1 | 2523 | AAH47457.1 |
Target Gene Details
Entrez Gene ID: | 3682 |
Gene Name: | integrin subunit alpha E |
Gene Aliases: |
CD103, HUMINAE |
Location: |
Chr.17:3714625-3803766 on Build GRCh38 |
Assay Gene Location: | Within Intron 27 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
ITGAE | NM_002208.4 | NP_002199.3 | ||
XM_011523823.2 | XP_011522125.1 | |||
XM_011523825.2 | XP_011522127.1 | |||
XM_011523827.2 | XP_011522129.1 | |||
XM_011523828.2 | XP_011522130.1 | |||
XM_017024586.1 | XP_016880075.1 | |||
BC113436.1 | ||||
BC117207.1 | ||||
L25851.2 | AAB59359.2 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv574237 | Chr.17:3486822 - 3729542 on Build GRCh38 | Loss | P2RX5-TAX1BP3 P2RX5 CTNS TRPV3 GSG2 TRPV1 SPATA22 ASPA EMC6 ITGAE TAX1BP3 SHPK |
nsv1065489 | Chr.17:2631416 - 3948349 on Build GRCh38 | Gain | OR3A1 P2RX5-TAX1BP3 OR1G1 OR1D5 SPATA22 ASPA RAP1GAP2 EMC6 SHPK CAMKK1 OR1E1 OR1A1 P2RX5 CTNS TRPV3 PAFAH1B1 NCBP3 OR3A4P LOC101927911 MIR6776 MIR1253 LOC105371591 OR1D2 P2RX1 OR3A2 GSG2 TAX1BP3 OR1D4 CLUH ATP2A3 TRPV1 LOC105371592 ITGAE OR3A3 CCDC92B OR1A2 OR1E2 |
nsv469791 | Chr.17:3700760 - 3885899 on Build GRCh38 | Loss | GSG2 NCBP3 ITGAE CAMKK1 |
nsv1055740 | Chr.17:3381841 - 3890153 on Build GRCh38 | Gain | P2RX5-TAX1BP3 OR3A2 GSG2 SPATA22 ASPA EMC6 TAX1BP3 SHPK CAMKK1 OR1E1 P2RX5 CTNS TRPV3 TRPV1 NCBP3 ITGAE OR3A3 OR1E2 |
nsv833342 | Chr.17:3626188 - 3806082 on Build GRCh38 | Loss | P2RX5-TAX1BP3 P2RX5 CTNS GSG2 EMC6 ITGAE TAX1BP3 SHPK |
More Information
Set Membership: |
Intragenic Exonic Intronic Non-exonic DGV Variation |