Assay Details
Target Gene Details
Entrez Gene ID: | 83903 |
Gene Name: | germ cell associated 2, haspin |
Gene Aliases: |
HASPIN |
Location: |
Chr.17:3723903-3726699 on Build GRCh38 |
Assay Gene Location: | Within Exon 1 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
GSG2 | NM_031965.2 | 1 | 2542 | NP_114171.2 |
AB039834.3 | 1 | 2539 | ||
AF289865.1 | 1 | 2538 | AAK30300.1 | |
AK056691.1 | 2 | 1428 | BAB71255.1 | |
AK292715.1 | 1 | 2528 | ||
AK310546.1 | ||||
BC047457.1 | 1 | 2523 | AAH47457.1 |
Target Gene Details
Entrez Gene ID: | 3682 |
Gene Name: | integrin subunit alpha E |
Gene Aliases: |
CD103, HUMINAE |
Location: |
Chr.17:3714625-3803766 on Build GRCh38 |
Assay Gene Location: | Within Intron 27 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
ITGAE | NM_002208.4 | NP_002199.3 | ||
XM_011523823.2 | XP_011522125.1 | |||
XM_011523825.2 | XP_011522127.1 | |||
XM_011523827.2 | XP_011522129.1 | |||
XM_011523828.2 | XP_011522130.1 | |||
XM_017024586.1 | XP_016880075.1 | |||
BC113436.1 | ||||
BC117207.1 | ||||
L25851.2 | AAB59359.2 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv574237 | Chr.17:3486822 - 3729542 on Build GRCh38 | Loss | SHPK P2RX5 TRPV1 CTNS TAX1BP3 SPATA22 GSG2 EMC6 P2RX5-TAX1BP3 TRPV3 ITGAE ASPA |
nsv1065489 | Chr.17:2631416 - 3948349 on Build GRCh38 | Gain | MIR1253 OR1D4 NCBP3 EMC6 OR3A3 MIR6776 P2RX5 P2RX1 OR1D2 TAX1BP3 OR1E2 OR1D5 TRPV3 ITGAE RAP1GAP2 LOC101927911 CCDC92B OR3A4P SHPK OR1E1 TRPV1 OR3A2 OR3A1 LOC105371591 GSG2 CAMKK1 OR1A2 OR1G1 ASPA PAFAH1B1 CLUH CTNS ATP2A3 LOC105371592 SPATA22 P2RX5-TAX1BP3 OR1A1 |
nsv469791 | Chr.17:3700760 - 3885899 on Build GRCh38 | Loss | NCBP3 GSG2 CAMKK1 ITGAE |
nsv1055740 | Chr.17:3381841 - 3890153 on Build GRCh38 | Gain | SHPK OR1E1 NCBP3 TRPV1 OR3A2 GSG2 EMC6 OR3A3 CAMKK1 ASPA P2RX5 CTNS TAX1BP3 SPATA22 OR1E2 P2RX5-TAX1BP3 TRPV3 ITGAE |
nsv833342 | Chr.17:3626188 - 3806082 on Build GRCh38 | Loss | SHPK P2RX5 CTNS TAX1BP3 GSG2 EMC6 P2RX5-TAX1BP3 ITGAE |
More Information
Set Membership: |
Intragenic Exonic Intronic Non-exonic DGV Variation |