Assay Details
Target Gene Details
Entrez Gene ID: | 26168 |
Gene Name: | SUMO1/sentrin/SMT3 specific peptidase 3 |
Gene Aliases: |
SMT3IP1, SSP3, Ulp1 |
Location: |
Chr.17:7561992-7571969 on Build GRCh38 |
Assay Gene Location: | Within Exon 11 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
SENP3 | NM_015670.5 | 11 | 1952 | NP_056485.2 |
AF199459.1 | 11 | 1739 | AAL25652.1 | |
AL050283.1 | 10 | 1263 | CAB43384.2 | |
AL834294.1 | 11 | 1746 | CAD38967.1 | |
AY008763.1 | 11 | 1720 | AAG33252.1 | |
BC048306.1 | 10 | 1190 | AAH48306.1 | |
BC080658.1 | 11 | 1934 | AAH80658.1 | |
BF514106.1 |
Target Gene Details
Entrez Gene ID: | 100533955 |
Gene Name: | SENP3-EIF4A1 readthrough (NMD candidate) |
Gene Aliases: |
- |
Location: |
Chr.17:7561992-7579006 on Build GRCh38 |
Assay Gene Location: | Within Exon 11 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
SENP3-EIF4A1 | NR_037926.1 | 11 | 1952 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
esv2422288 | Chr.17:6789933 - 7646709 on Build GRCh38 | Deletion | SLC35G6 GABARAP SPEM1 POLR2A ASGR2 SNORA48 TNK1 LOC107983988 MIR497HG BCL6B TMEM256-PLSCR3 TNFSF12 ACAP1 ALOX12P2 ACADVL C17orf74 SNORD10 EIF4A1 LOC100996842 CHRNB1 SENP3-EIF4A1 YBX2 ATP1B2 ASGR1 ALOX12 CLEC10A SLC16A11 FGF11 ALOX12-AS1 CTDNEP1 MPDU1 KCTD11 MIR497 FBXO39 TEKT1 EIF5A C17orf49 FXR2 DLG4 MIR195 CLDN7 PLSCR3 NEURL4 PHF23 TNFSF13 TMEM102 CD68 NLGN2 TMEM256 SAT2 SOX15 SLC2A4 ZBTB4 TNFSF12-TNFSF13 GPS2 SNORA67 RNASEK-C17orf49 SLC16A13 SHBG MIR324 SENP3 DVL2 RNASEK ELP5 TMEM95 |
nsv574322 | Chr.17:7010333 - 7689462 on Build GRCh38 | Loss | SLC35G6 GABARAP SPEM1 POLR2A ASGR2 SNORA48 TNK1 LOC107983988 MIR497HG BCL6B TMEM256-PLSCR3 TNFSF12 ACAP1 ACADVL C17orf74 SNORD10 EIF4A1 LOC100996842 CHRNB1 SENP3-EIF4A1 YBX2 ATP1B2 ASGR1 WRAP53 ALOX12 CLEC10A SLC16A11 FGF11 ALOX12-AS1 CTDNEP1 MPDU1 TP53 KCTD11 MIR497 EIF5A C17orf49 FXR2 DLG4 MIR195 CLDN7 PLSCR3 NEURL4 PHF23 TNFSF13 TMEM102 CD68 NLGN2 TMEM256 SAT2 SOX15 SLC2A4 ZBTB4 TNFSF12-TNFSF13 GPS2 SNORA67 RNASEK-C17orf49 SLC16A13 SHBG MIR324 SENP3 DVL2 RNASEK ELP5 TMEM95 |
More Information
Set Membership: |
Intragenic Exonic DGV Variation |