Assay Details
Target Gene Details
Entrez Gene ID: | 1953 |
Gene Name: | multiple EGF like domains 6 |
Gene Aliases: |
EGFL3 |
Location: |
Chr.1:3487942-3624757 on Build GRCh38 |
Assay Gene Location: | Within Exon 41 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
MEGF6 | NM_001409.3 | 37 | 5450 | NP_001400.3 |
XM_006710406.3 | 34 | 5085 | XP_006710469.1 | |
XM_011540885.1 | 38 | 5755 | XP_011539187.1 | |
XM_011540886.1 | 37 | 5626 | XP_011539188.1 | |
XM_011540887.2 | 33 | 4963 | XP_011539189.1 | |
XM_017000533.1 | 37 | 5623 | XP_016856022.1 | |
AB011539.2 | BAA32467.2 | |||
AB231860.1 | ||||
AF086226.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
esv2758915 | Chr.1:3372374 - 3632289 on Build GRCh38 | Gain | ARHGEF16 PRDM16 TPRG1L MIR551A MEGF6 WRAP73 |
nsv470687 | Chr.1:3356499 - 3763210 on Build GRCh38 | Loss | TP73-AS1 ARHGEF16 PRDM16 TPRG1L TP73 MIR551A CCDC27 MEGF6 WRAP73 |
nsv1012423 | Chr.1:3477686 - 4747449 on Build GRCh38 | Gain | C1orf174 LINC01134 SMIM1 ARHGEF16 CEP104 TPRG1L LRRC47 LOC284661 MIR551A CCDC27 AJAP1 MEGF6 TP73-AS1 LINC01346 TP73 DFFB WRAP73 |
nsv951959 | Chr.1:3051037 - 3812036 on Build GRCh38 | Deletion | SMIM1 ARHGEF16 LOC105378604 PRDM16 TPRG1L LRRC47 MIR551A CCDC27 LINC00982 MEGF6 TP73-AS1 MIR4251 TP73 WRAP73 |
esv3893545 | Chr.1:3460878 - 3512044 on Build GRCh38 | Loss | ARHGEF16 MEGF6 |
nsv830203 | Chr.1:3446374 - 3607752 on Build GRCh38 | Loss | ARHGEF16 MIR551A MEGF6 |
nsv299 | Chr.1:3476928 - 3512705 on Build GRCh38 | Insertion | ARHGEF16 MEGF6 |
More Information
Additional Information:
For this assay, SNP(s) [rs74636253] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Exonic DGV Variation |