Assay Details
Target Gene Details
Entrez Gene ID: | 1973 |
Gene Name: | eukaryotic translation initiation factor 4A1 |
Gene Aliases: |
DDX2A, EIF-4A, EIF4A, eIF-4A-I, eIF4A-I |
Location: |
Chr.17:7572706-7579006 on Build GRCh38 |
Assay Gene Location: | Overlaps Exon 8 - Intron 8 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
EIF4A1 | NM_001204510.1 | NP_001191439.1 | ||
NM_001416.3 | NP_001407.1 | |||
AK130082.1 | ||||
AK289453.1 | ||||
AK291971.1 | ||||
AK296664.1 | 5 | 604 | ||
AK297916.1 | ||||
AK309274.1 | 7 | 813 | ||
AK312630.1 | ||||
BC009585.1 | AAH09585.1 | |||
BC073752.1 | AAH73752.1 | |||
BT019880.1 | AAV38683.1 | |||
BT019881.1 | AAV38684.1 | |||
D13748.1 | BAA02897.1 |
Target Gene Details
Entrez Gene ID: | 100533955 |
Gene Name: | SENP3-EIF4A1 readthrough (NMD candidate) |
Gene Aliases: |
- |
Location: |
Chr.17:7561992-7579006 on Build GRCh38 |
Assay Gene Location: | Overlaps Exon 19 - Intron 19 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
SENP3-EIF4A1 | NR_037926.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
esv2422288 | Chr.17:6789933 - 7646709 on Build GRCh38 | Deletion | SLC16A13 SNORD10 ZBTB4 NEURL4 PLSCR3 SNORA48 SENP3-EIF4A1 CLDN7 RNASEK CD68 FBXO39 TNK1 KCTD11 TNFSF13 SAT2 ALOX12P2 TMEM256 GABARAP SNORA67 TEKT1 DVL2 ASGR2 GPS2 TMEM256-PLSCR3 NLGN2 EIF5A RNASEK-C17orf49 MIR324 ACADVL CTDNEP1 ALOX12-AS1 TMEM95 YBX2 LOC100996842 ELP5 MPDU1 CLEC10A POLR2A FGF11 TMEM102 ACAP1 CHRNB1 SENP3 TNFSF12-TNFSF13 FXR2 PHF23 BCL6B MIR497 C17orf49 TNFSF12 SLC35G6 LOC107983988 SPEM1 SOX15 SLC2A4 MIR497HG ASGR1 ALOX12 SHBG ATP1B2 MIR195 SLC16A11 DLG4 C17orf74 EIF4A1 |
nsv960401 | Chr.17:7577078 - 7578770 on Build GRCh38 | Duplication | SENP3-EIF4A1 SNORA67 EIF4A1 |
nsv574322 | Chr.17:7010333 - 7689462 on Build GRCh38 | Loss | SLC16A13 SNORD10 ZBTB4 NEURL4 PLSCR3 SNORA48 SENP3-EIF4A1 CLDN7 RNASEK WRAP53 CD68 TNK1 KCTD11 TNFSF13 SAT2 TP53 TMEM256 GABARAP SNORA67 DVL2 ASGR2 GPS2 TMEM256-PLSCR3 NLGN2 EIF5A RNASEK-C17orf49 MIR324 ACADVL CTDNEP1 ALOX12-AS1 TMEM95 YBX2 LOC100996842 ELP5 MPDU1 CLEC10A POLR2A FGF11 TMEM102 ACAP1 CHRNB1 SENP3 TNFSF12-TNFSF13 FXR2 PHF23 BCL6B MIR497 C17orf49 TNFSF12 SLC35G6 LOC107983988 SPEM1 SOX15 SLC2A4 MIR497HG ASGR1 ALOX12 SHBG ATP1B2 MIR195 SLC16A11 DLG4 C17orf74 EIF4A1 |
More Information
Set Membership: |
Intragenic Non-exonic DGV Variation |