Assay Details
Target Gene Details
Entrez Gene ID: | 283659 |
Gene Name: | protogenin |
Gene Aliases: |
IGDCC5 |
Location: |
Chr.15:55611540-55743649 on Build GRCh38 |
Assay Gene Location: | Within Exon 23 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
PRTG | NM_173814.5 | 20 | 3793 | NP_776175.2 |
XM_017022081.1 | 20 | 3880 | XP_016877570.1 | |
AK098622.1 | BAC05355.1 | |||
AY630258.1 | 20 | 3653 | AAU05741.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
esv2761899 | Chr.15:53592144 - 55643724 on Build GRCh38 | Gain+Loss | WDR72 MIR628 PIGB PYGO1 LOC105370829 RAB27A PRTG PIGBOS1 DYX1C1-CCPG1 CCPG1 LOC107984745 C15orf65 RSL24D1 DYX1C1 UNC13C |
nsv569540 | Chr.15:55573867 - 55657884 on Build GRCh38 | Gain | PYGO1 PRTG |
esv3569609 | Chr.15:55507718 - 55651515 on Build GRCh38 | Gain | PYGO1 LOC107984745 DYX1C1 PRTG |
nsv1043789 | Chr.15:55108674 - 55800256 on Build GRCh38 | Gain | PIGBOS1 MIR628 DYX1C1-CCPG1 PIGB CCPG1 PYGO1 LOC107984745 C15orf65 RSL24D1 RAB27A DYX1C1 PRTG |
nsv569539 | Chr.15:55430015 - 55963576 on Build GRCh38 | Loss | DYX1C1-CCPG1 NEDD4 PYGO1 LOC107984745 DYX1C1 PRTG |
More Information
Additional Information:
For this assay, SNP(s) [rs80194880] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Exonic DGV Variation |