Assay Details
Target Gene Details
Entrez Gene ID: | 6472 |
Gene Name: | serine hydroxymethyltransferase 2 |
Gene Aliases: |
GLYA, HEL-S-51e, SHMT |
Location: |
Chr.12:57229573-57234935 on Build GRCh38 |
Assay Gene Location: | Within Exon 1 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
SHMT2 | NM_001166356.1 | 1 | 203 | NP_001159828.1 |
NM_005412.5 | 1 | 203 | NP_005403.2 | |
NR_029417.1 | 1 | 203 | ||
XM_011538675.2 | 1 | 115 | XP_011536977.1 | |
XM_011538677.2 | 1 | 96 | XP_011536979.1 | |
AK055053.1 | ||||
AK223555.1 | BAD97275.1 | |||
AK295941.1 | ||||
AK298231.1 | ||||
AK301339.1 | ||||
AK303827.1 | ||||
BC011911.2 | AAH11911.1 | |||
BC013677.2 | AAH13677.1 | |||
BC032584.1 | AAH32584.1 | |||
BC044211.1 | AAH44211.1 | |||
BC091501.1 | AAH91501.1 | |||
BT006866.1 | AAP35512.1 | |||
DC386590.1 | 1 | 203 | ||
EU668344.1 | ||||
KU178333.1 | ||||
KU178334.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv482992 | Chr.12:56206217 - 57706217 on Build GRCh38 | Gain+Loss | BAZ2A PAN2 SNORA105C GLS2 MIR6758 MBD6 DCTN2 MIP NAB2 NACA HBCBP GLI1 KIF5A APOF HSD17B6 SDR9C7 RNF41 SNORD59B CNPY2 RDH16 ARHGAP9 OS9 TIMELESS GPR182 IL23A DDIT3 NEMP1 LRP1-AS MIR1228 ARHGEF25 SLC26A10 SNORD59A RBMS2 NXPH4 SPRYD4 R3HDM2 COQ10A STAC3 MARS LOC101927583 ZBTB39 SHMT2 ANKRD52 PIP4K2C SLC39A5 NABP2 NDUFA4L2 MYO1A DTX3 TAC3 STAT6 STAT2 MIR616 B4GALNT1 CS ATP5B PRIM1 INHBE PTGES3 LRP1 INHBC |
nsv519293 | Chr.12:57189889 - 57243810 on Build GRCh38 | Loss | NDUFA4L2 NXPH4 SHMT2 MIR1228 STAC3 LRP1 |
nsv952189 | Chr.12:57127118 - 57245617 on Build GRCh38 | Deletion | NDUFA4L2 NXPH4 SHMT2 LRP1-AS MIR1228 STAC3 LRP1 |
dgv96n21 | Chr.12:57139199 - 57243810 on Build GRCh38 | Loss | NDUFA4L2 NXPH4 SHMT2 LRP1-AS MIR1228 STAC3 LRP1 |
More Information
Set Membership: |
Intragenic Exonic DGV Variation |