Product Details

Assay Reference Genome
Location

Chr.7:18109872 on build GRCh38
Cytoband
7p21.1
Species
Homo sapiens
Variation Type
Copy Number

Additional Information

For this assay, SNP(s) [rs117947129] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Target Gene Details

Entrez Gene ID
9734
Gene Symbol
HDAC9
Gene Name
histone deacetylase 9
Gene Aliases
HD7, HD7b, HD9, HDAC, HDAC7, HDAC7B, HDAC9B, HDAC9FL, HDRP, MITR
Location
Chr.7:18086942-19003745 on build GRCh38
Assay Gene Location
Within Intron 1
Gene Symbol Transcript Accession Exon Location Assay Location Protein ID
HDAC9 NM_001204144.2 NP_001191073.1
NM_001321868.1 NP_001308797.1
NM_001321869.1 NP_001308798.1
NM_001321870.1 NP_001308799.1
NM_001321871.1 NP_001308800.1
NM_001321872.1 NP_001308801.1
NM_001321873.1 NP_001308802.1
XM_011515631.2 XP_011513933.1
AK304298.1
DC333353.1

Target Copy Number Variation Details

DGV Version
Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1022746 Chr7:17938480 - 18193835 on Build GRCh38 Gain HDAC9 MIR1302-6 PRPS1L1 SNX13
nsv606357 Chr7:17898868 - 18335622 on Build GRCh38 Gain HDAC9 MIR1302-6 PRPS1L1 SNX13
nsv606358 Chr7:18045220 - 18376474 on Build GRCh38 Gain HDAC9 MIR1302-6
nsv1025023 Chr7:17826173 - 18318007 on Build GRCh38 Gain HDAC9 MIR1302-6 PRPS1L1 SNX13
nsv1027814 Chr7:18104576 - 18155276 on Build GRCh38 Gain HDAC9 MIR1302-6
esv3612445 Chr7:18087589 - 18114245 on Build GRCh38 Loss HDAC9

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