Product Details

Assay Reference Genome
Location

Chr.16:5245157 on build GRCh38
Cytoband
16p13.3
Species
Homo sapiens
Variation Type
Copy Number

Additional Information

For this assay, SNP(s) [rs112800026] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Target Gene Details

Entrez Gene ID
54715
Gene Symbol
RBFOX1
Gene Name
RNA binding protein, fox-1 homolog 1
Gene Aliases
2BP1, A2BP1, FOX-1, FOX1, HRNBP1
Location
Chr.16:5239749-7713343 on build GRCh38
Assay Gene Location
Within Intron 1
Gene Symbol Transcript Accession Exon Location Assay Location Protein ID
RBFOX1 XM_017023319.1 XP_016878808.1

Target Copy Number Variation Details

DGV Version
Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1035156 Chr16:5091032 - 5996934 on Build GRCh38 Gain LINC01570 RBFOX1 MIR8065 EEF2KMT
nsv974753 Chr16:5236416 - 5296073 on Build GRCh38 Duplication RBFOX1
nsv428318 Chr16:5011594 - 5374828 on Build GRCh38 Gain NAGPA-AS1 RBFOX1 NAGPA SEC14L5 EEF2KMT C16orf89 ALG1
nsv516117 Chr16:5235393 - 5301110 on Build GRCh38 Loss RBFOX1
dgv2696n100 Chr16:5114681 - 5298137 on Build GRCh38 Loss RBFOX1
esv3637713 Chr16:4957958 - 5307305 on Build GRCh38 Gain NAGPA-AS1 RBFOX1 NAGPA SEC14L5 EEF2KMT C16orf89 ALG1
nsv1046986 Chr16:4049000 - 5555721 on Build GRCh38 Gain SEPT12 SMIM22 VASN C16orf71 ADCY9 HMOX2 NAGPA-AS1 UBALD1 DNAJA3 LOC105371063 NUDT16L1 ROGDI MIR6769A CORO7 NMRAL1 TFAP4 PAM16 GLYR1 CDIP1 ANKS3 ALG1 RBFOX1 LINC01569 SRL EEF2KMT CORO7-PAM16 C16orf89 NAGPA MGRN1 SEC14L5 C16orf96 UBN1 ZNF500 GLIS2-AS1 GLIS2 PPL
nsv1045304 Chr16:5205761 - 5326875 on Build GRCh38 Loss RBFOX1
esv34300 Chr16:5005938 - 5322534 on Build GRCh38 Gain NAGPA-AS1 RBFOX1 NAGPA SEC14L5 EEF2KMT C16orf89 ALG1
nsv1038475 Chr16:5004985 - 5310633 on Build GRCh38 Gain NAGPA-AS1 RBFOX1 NAGPA SEC14L5 EEF2KMT C16orf89 ALG1
nsv457360 Chr16:4960912 - 5284683 on Build GRCh38 Loss NAGPA-AS1 RBFOX1 NAGPA SEC14L5 EEF2KMT C16orf89 ALG1
esv2760069 Chr16:4922849 - 5374828 on Build GRCh38 Gain+Loss NAGPA-AS1 RBFOX1 NAGPA SEC14L5 EEF2KMT C16orf89 ALG1 PPL
nsv817715 Chr16:5006294 - 5309352 on Build GRCh38 Gain NAGPA-AS1 RBFOX1 NAGPA SEC14L5 EEF2KMT C16orf89 ALG1

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