Product Details

Assay Reference Genome
Location

Chr.16:5312891 on build GRCh38
Cytoband
16p13.3
Species
Homo sapiens
Variation Type
Copy Number

Additional Information

For this assay, SNP(s) [rs75744218,rs78251475] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Target Gene Details

Entrez Gene ID
54715
Gene Symbol
RBFOX1
Gene Name
RNA binding protein, fox-1 homolog 1
Gene Aliases
2BP1, A2BP1, FOX-1, FOX1, HRNBP1
Location
Chr.16:5239749-7713343 on build GRCh38
Assay Gene Location
Within Intron 1
Gene Symbol Transcript Accession Exon Location Assay Location Protein ID
RBFOX1 XM_017023319.1 XP_016878808.1

Target Copy Number Variation Details

DGV Version
Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1035156 Chr16:5091032 - 5996934 on Build GRCh38 Gain RBFOX1 MIR8065 EEF2KMT LINC01570
nsv1046986 Chr16:4049000 - 5555721 on Build GRCh38 Gain NAGPA-AS1 C16orf71 UBN1 LOC105371063 PAM16 SEC14L5 SEPT12 C16orf89 SRL GLIS2 C16orf96 NAGPA CDIP1 ANKS3 TFAP4 NUDT16L1 ALG1 MIR6769A ROGDI RBFOX1 DNAJA3 VASN NMRAL1 CORO7 GLYR1 LINC01569 EEF2KMT UBALD1 CORO7-PAM16 HMOX2 MGRN1 ZNF500 PPL GLIS2-AS1 SMIM22 ADCY9
nsv1045304 Chr16:5205761 - 5326875 on Build GRCh38 Loss RBFOX1
dgv2698n100 Chr16:5304641 - 5327717 on Build GRCh38 Loss RBFOX1
nsv1036241 Chr16:5271882 - 5387609 on Build GRCh38 Loss RBFOX1
esv34300 Chr16:5005938 - 5322534 on Build GRCh38 Gain RBFOX1 NAGPA-AS1 NAGPA SEC14L5 EEF2KMT C16orf89 ALG1
esv2760069 Chr16:4922849 - 5374828 on Build GRCh38 Gain+Loss RBFOX1 NAGPA-AS1 PPL NAGPA SEC14L5 EEF2KMT C16orf89 ALG1
nsv428318 Chr16:5011594 - 5374828 on Build GRCh38 Gain RBFOX1 NAGPA-AS1 NAGPA SEC14L5 EEF2KMT C16orf89 ALG1
esv2762021 Chr16:5293419 - 5377238 on Build GRCh38 Loss RBFOX1
nsv1037303 Chr16:5287645 - 5327595 on Build GRCh38 Loss RBFOX1

View Full Product Details