Product Details

Assay Reference Genome
Location

Chr.4:90130292 on build GRCh38
Cytoband
4q22.1
Species
Homo sapiens
Variation Type
Copy Number

Additional Information

For this assay, SNP(s) [rs140041420] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Target Gene Details

Entrez Gene ID
401145
Gene Symbol
CCSER1
Gene Name
coiled-coil serine rich protein 1
Gene Aliases
FAM190A
Location
Chr.4:90127394-91602219 on build GRCh38
Assay Gene Location
Within Intron 3
Gene Symbol Transcript Accession Exon Location Assay Location Protein ID
CCSER1 NM_001145065.1 NP_001138537.1
XM_011531936.1 XP_011530238.1
XM_011531938.2 XP_011530240.1
XM_011531941.2 XP_011530243.1
XM_011531942.2 XP_011530244.1
XM_011531943.2 XP_011530245.1
XM_011531945.1 XP_011530247.1
XM_011531946.2 XP_011530248.1
XM_011531947.2 XP_011530249.1
XM_011531948.1 XP_011530250.1
XM_011531949.2 XP_011530251.1
XM_011531950.2 XP_011530252.1
XM_011531951.2 XP_011530253.1
XM_011531955.2 XP_011530257.1
XM_011531956.2 XP_011530258.1
XM_011531957.2 XP_011530259.1
XM_011531958.2 XP_011530260.1
XM_017008194.1 XP_016863683.1
XM_017008195.1 XP_016863684.1
XM_017008196.1 XP_016863685.1
XM_017008197.1 XP_016863686.1
XM_017008198.1 XP_016863687.1
XM_017008199.1 XP_016863688.1
XM_017008200.1 XP_016863689.1
XM_017008201.1 XP_016863690.1
XM_017008202.1 XP_016863691.1
AB051467.1
AK097436.1
AK310825.1
DB027029.1

Target Copy Number Variation Details

DGV Version
Release date: 2016-05-15, GRCh GRCh38
Target
Variation
Location CNV
Subtype
Genes
nsv830006 Chr4:90050505 - 90265189 on Build GRCh38 Loss CCSER1
nsv470053 Chr4:89958462 - 90518422 on Build GRCh38 Gain CCSER1
nsv1012406 Chr4:89246630 - 90245636 on Build GRCh38 Loss GPRIN3 SNCA MMRN1 SNCA-AS1 CCSER1
nsv594806 Chr4:88621130 - 90539537 on Build GRCh38 Gain GPRIN3 FAM13A-AS1 SNCA HERC3 MMRN1 SNCA-AS1 CCSER1 FAM13A TIGD2 NAP1L5

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