Product Details

Assay Reference Genome
Location

Chr.1:901867 on build GRCh38
Cytoband
1p36.33
Species
Variation Type
Copy Number

Additional Information

For this assay, SNP(s) [rs115809836] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Target Gene Details

Target Copy Number Variation Details

DGV Version
Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv4n111 Chr1:869076 - 914637 on Build GRCh38 Duplication FAM41C LOC284600
nsv1004962 Chr1:629241 - 915295 on Build GRCh38 Gain FAM41C MIR6723 LOC107984841 LINC01128 FAM87B MTND1P23 OR4F16 LOC100288069 LINC00115 MTND2P28 LOC284600 LOC100287934 LOC100133331
nsv482937 Chr1:10001 - 2368561 on Build GRCh38 Loss ISG15 MIR6808 NOC2L KLHL17 LOC102724312 TNFRSF4 FNDC10 SDF4 ATAD3C LOC100129534 TMEM240 PERM1 LOC105378949 PLEKHN1 C1orf159 LOC105378948 ATAD3A B3GALT6 MMP23A HES4 ANKRD65 TAS1R3 SSU72 MIR6859-2 LOC148413 MXRA8 LOC100288069 LOC107985728 CCNL2 TTLL10-AS1 SAMD11 NADK MIR6859-1 LOC107984841 PUSL1 MORN1 CDK11B SKI ACAP3 MIR6727 LOC102725121 LOC105378592 LOC100288175 FAM41C AURKAIP1 CPSF3L TMEM88B CFAP74 SCNN1D MTND1P23 LOC101928626 OR4F16 MTND2P28 SLC35E2B RNF223 WASH7P TMEM52 LINC01128 FAM87B LOC100132287 LINC00115 LOC105378589 FAM132A MRPL20 LOC100133331 ATAD3B PRKCZ MIR1302-2 DDX11L1 MIR429 LOC100130417 MIR200B CPTP GNB1 AGRN LOC100134822 LINC01342 MIR6726 FAM138A LOC284600 VWA1 MMP23B LOC100287934 UBE2J2 DVL1 OR4F29 MIB2 CALML6 SLC35E2 GABRD MIR6723 FAAP20 LOC729737 LOC107985729 LOC100506504 OR4F5 LOC105378947 MIR200A TNFRSF18 TTLL10 CDK11A LOC105378591
nsv950451 Chr1:899421 - 1094520 on Build GRCh38 Deletion LOC100288175 LOC100130417 SAMD11 ISG15 HES4 NOC2L KLHL17 PERM1 AGRN PLEKHN1 C1orf159 LOC284600 LOC107985728 LOC105378948 RNF223
nsv509035 Chr1:891406 - 985724 on Build GRCh38 Insertion LOC100130417 SAMD11 NOC2L KLHL17 LOC284600 PERM1 LOC107985728 PLEKHN1
dgv1n67 Chr1:811028 - 914557 on Build GRCh38 Gain FAM41C LINC00115 LOC284600 LINC01128 FAM87B
nsv1005935 Chr1:805477 - 915295 on Build GRCh38 Gain FAM41C LINC00115 LOC284600 LINC01128 FAM87B
esv3584982 Chr1:837710 - 917284 on Build GRCh38 Gain LOC100130417 FAM41C LOC284600 LINC01128
nsv1009537 Chr1:841742 - 915295 on Build GRCh38 Gain FAM41C LOC284600 LINC01128
nsv428334 Chr1:874371 - 1220569 on Build GRCh38 Gain LOC100288175 LOC100130417 FAM41C ISG15 MIR200B HES4 NOC2L KLHL17 AGRN TNFRSF4 LINC01342 SDF4 LOC284600 LOC107985728 RNF223 TTLL10-AS1 SAMD11 PERM1 PLEKHN1 C1orf159 LOC105378948 MIR200A TNFRSF18 TTLL10 MIR429
nsv10161 Chr1:776731 - 1777210 on Build GRCh38 Gain+Loss LOC100288175 FAM41C AURKAIP1 CPSF3L TMEM88B ISG15 MIR6808 NOC2L KLHL17 LOC102724312 TNFRSF4 SCNN1D FNDC10 SDF4 SLC35E2B RNF223 ATAD3C TMEM240 PERM1 PLEKHN1 LINC01128 FAM87B C1orf159 LINC00115 FAM132A LOC105378948 ATAD3A MRPL20 ATAD3B MIR429 B3GALT6 LOC100130417 MMP23A MIR200B CPTP HES4 ANKRD65 AGRN TAS1R3 LINC01342 SSU72 LOC148413 MIR6726 MXRA8 LOC100288069 LOC284600 LOC107985728 CCNL2 VWA1 MMP23B LOC100287934 UBE2J2 DVL1 MIB2 SLC35E2 TTLL10-AS1 SAMD11 NADK PUSL1 CDK11B LOC107985729 ACAP3 MIR6727 MIR200A TNFRSF18 TTLL10 CDK11A
dgv5n100 Chr1:585989 - 1114424 on Build GRCh38 Gain LOC100288175 LOC100130417 FAM41C ISG15 HES4 NOC2L KLHL17 AGRN MTND1P23 LOC101928626 OR4F16 LOC100288069 MTND2P28 LOC284600 LOC107985728 RNF223 LOC100287934 SAMD11 MIR6723 LOC107984841 PERM1 PLEKHN1 LINC01128 FAM87B C1orf159 LINC00115 LOC105378948 LOC105378947 LOC100133331
nsv517709 Chr1:817186 - 1275912 on Build GRCh38 Gain+Loss LOC100288175 LOC100130417 FAM41C ISG15 MIR200B HES4 NOC2L KLHL17 AGRN TNFRSF4 LINC01342 SDF4 LOC284600 LOC107985728 RNF223 UBE2J2 TTLL10-AS1 SAMD11 PERM1 PLEKHN1 LINC01128 FAM87B C1orf159 LINC00115 FAM132A LOC105378948 MIR200A TNFRSF18 TTLL10 MIR429 B3GALT6
dgv1n111 Chr1:690090 - 939522 on Build GRCh38 Duplication LOC100130417 SAMD11 FAM41C LOC107984841 LINC01128 FAM87B OR4F16 LOC100288069 LINC00115 LOC284600 LOC107985728 LOC100287934 LOC100133331
dgv3n111 Chr1:783283 - 939522 on Build GRCh38 Duplication LOC100130417 SAMD11 FAM41C LINC00115 LOC284600 LOC107985728 LOC100287934 LINC01128 FAM87B
dgv2n67 Chr1:877618 - 1426500 on Build GRCh38 Gain LOC100288175 LOC100130417 AURKAIP1 CPSF3L TMEM88B ISG15 MIR200B CPTP MIR6808 HES4 NOC2L KLHL17 ANKRD65 AGRN TNFRSF4 SCNN1D TAS1R3 LINC01342 SDF4 LOC148413 MIR6726 MXRA8 LOC284600 LOC107985728 CCNL2 RNF223 UBE2J2 DVL1 TTLL10-AS1 SAMD11 PUSL1 PERM1 PLEKHN1 C1orf159 ACAP3 MIR6727 FAM132A LOC105378948 MRPL20 MIR200A TNFRSF18 TTLL10 MIR429 B3GALT6
nsv832980 Chr1:848279 - 1007037 on Build GRCh38 Gain LOC100130417 SAMD11 FAM41C HES4 NOC2L KLHL17 LOC284600 PERM1 LOC107985728 PLEKHN1 LINC01128
esv3584976 Chr1:733250 - 914824 on Build GRCh38 Gain FAM41C LOC100288069 LINC00115 LOC107984841 LOC284600 LOC100287934 LINC01128 FAM87B

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