Product Details

Assay Reference Genome
Location

Chr.1:902874 on build GRCh38
Cytoband
1p36.33
Species
Variation Type
Copy Number

Additional Information

For this assay, SNP(s) [rs115305660] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Target Gene Details

Target Copy Number Variation Details

DGV Version
Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv4n111 Chr1:869076 - 914637 on Build GRCh38 Duplication FAM41C LOC284600
nsv1004962 Chr1:629241 - 915295 on Build GRCh38 Gain LOC100133331 MTND1P23 LOC107984841 OR4F16 LINC01128 LINC00115 LOC284600 FAM87B MTND2P28 MIR6723 LOC100287934 FAM41C LOC100288069
nsv482937 Chr1:10001 - 2368561 on Build GRCh38 Loss FNDC10 LOC100130417 HES4 LINC00115 MMP23A MIR6859-1 TMEM52 CPTP CDK11B LOC105378947 MIR1302-2 LOC100287934 RNF223 MRPL20 FAM138A SCNN1D CALML6 LOC105378591 TNFRSF18 SSU72 MIR6727 SAMD11 LOC101928626 ATAD3C LOC102724312 CFAP74 TTLL10-AS1 DVL1 CDK11A OR4F16 LINC01128 LOC284600 MXRA8 MIR6723 LOC100288175 LOC729737 FAM41C PLEKHN1 AURKAIP1 MMP23B LOC102725121 VWA1 SDF4 MIR429 LINC01342 UBE2J2 SLC35E2 NADK PERM1 FAM87B MTND2P28 LOC100132287 CCNL2 TMEM240 LOC105378589 AGRN DDX11L1 MIR6726 FAAP20 LOC100129534 LOC100288069 TMEM88B LOC100506504 SKI TAS1R3 PRKCZ LOC107985729 PUSL1 MORN1 MIR6859-2 LOC148413 LOC105378592 MIR6808 SLC35E2B LOC100133331 MTND1P23 OR4F29 NOC2L LOC107984841 B3GALT6 LOC105378949 LOC107985728 OR4F5 MIR200A ACAP3 LOC105378948 GNB1 WASH7P FAM132A MIR200B LOC100134822 ATAD3A ISG15 CPSF3L GABRD ATAD3B KLHL17 MIB2 ANKRD65 C1orf159 TNFRSF4 TTLL10
nsv950451 Chr1:899421 - 1094520 on Build GRCh38 Deletion NOC2L LOC100130417 HES4 LOC284600 PERM1 SAMD11 LOC107985728 AGRN ISG15 LOC100288175 RNF223 LOC105378948 KLHL17 C1orf159 PLEKHN1
nsv509035 Chr1:891406 - 985724 on Build GRCh38 Insertion NOC2L LOC100130417 LOC284600 KLHL17 PLEKHN1 PERM1 SAMD11 LOC107985728
dgv1n67 Chr1:811028 - 914557 on Build GRCh38 Gain FAM41C LINC01128 LINC00115 LOC284600 FAM87B
nsv1005935 Chr1:805477 - 915295 on Build GRCh38 Gain FAM41C LINC01128 LINC00115 LOC284600 FAM87B
esv3584982 Chr1:837710 - 917284 on Build GRCh38 Gain LOC100130417 FAM41C LINC01128 LOC284600
nsv1009537 Chr1:841742 - 915295 on Build GRCh38 Gain FAM41C LINC01128 LOC284600
nsv428334 Chr1:874371 - 1220569 on Build GRCh38 Gain NOC2L LOC100130417 HES4 LOC284600 PERM1 LOC107985728 AGRN LOC100288175 MIR200A RNF223 FAM41C LOC105378948 PLEKHN1 TNFRSF18 SAMD11 MIR200B ISG15 SDF4 MIR429 LINC01342 KLHL17 C1orf159 TNFRSF4 TTLL10-AS1 TTLL10
nsv10161 Chr1:776731 - 1777210 on Build GRCh38 Gain+Loss NADK FNDC10 LOC100130417 HES4 LINC00115 MMP23A PERM1 FAM87B CCNL2 CPTP CDK11B TMEM240 AGRN LOC100287934 RNF223 MRPL20 MIR6726 SCNN1D LOC100288069 TMEM88B TNFRSF18 SSU72 TAS1R3 MIR6727 SAMD11 LOC107985729 PUSL1 LOC148413 ATAD3C MIR6808 LOC102724312 TTLL10-AS1 DVL1 SLC35E2B NOC2L CDK11A B3GALT6 LINC01128 LOC284600 MXRA8 LOC107985728 LOC100288175 MIR200A ACAP3 FAM41C LOC105378948 PLEKHN1 AURKAIP1 MMP23B FAM132A MIR200B ATAD3A ISG15 VWA1 CPSF3L SDF4 ATAD3B MIR429 LINC01342 KLHL17 MIB2 ANKRD65 C1orf159 TNFRSF4 UBE2J2 SLC35E2 TTLL10
dgv5n100 Chr1:585989 - 1114424 on Build GRCh38 Gain LOC100133331 MTND1P23 NOC2L LOC107984841 LOC100130417 OR4F16 HES4 LINC01128 LINC00115 LOC284600 PERM1 FAM87B MTND2P28 MIR6723 LOC107985728 LOC105378947 AGRN LOC100288175 LOC100287934 RNF223 FAM41C LOC105378948 PLEKHN1 LOC100288069 SAMD11 LOC101928626 ISG15 KLHL17 C1orf159
nsv517709 Chr1:817186 - 1275912 on Build GRCh38 Gain+Loss NOC2L LOC100130417 B3GALT6 HES4 LINC01128 LINC00115 LOC284600 PERM1 FAM87B LOC107985728 AGRN LOC100288175 MIR200A RNF223 FAM41C LOC105378948 PLEKHN1 TNFRSF18 FAM132A SAMD11 MIR200B ISG15 SDF4 MIR429 LINC01342 KLHL17 C1orf159 TNFRSF4 UBE2J2 TTLL10-AS1 TTLL10
dgv1n111 Chr1:690090 - 939522 on Build GRCh38 Duplication LOC100133331 LOC107984841 LOC100130417 OR4F16 LINC01128 LINC00115 LOC284600 FAM87B SAMD11 LOC107985728 LOC100287934 FAM41C LOC100288069
dgv3n111 Chr1:783283 - 939522 on Build GRCh38 Duplication LOC100287934 LOC100130417 FAM41C LINC01128 LINC00115 LOC284600 FAM87B SAMD11 LOC107985728
dgv2n67 Chr1:877618 - 1426500 on Build GRCh38 Gain NOC2L LOC100130417 B3GALT6 HES4 LOC284600 PERM1 MXRA8 CCNL2 CPTP LOC107985728 AGRN LOC100288175 MIR200A RNF223 ACAP3 MRPL20 MIR6726 LOC105378948 PLEKHN1 SCNN1D TMEM88B AURKAIP1 TNFRSF18 FAM132A TAS1R3 MIR6727 SAMD11 MIR200B PUSL1 ISG15 LOC148413 CPSF3L SDF4 MIR429 LINC01342 KLHL17 ANKRD65 C1orf159 MIR6808 TNFRSF4 UBE2J2 TTLL10-AS1 DVL1 TTLL10
nsv832980 Chr1:848279 - 1007037 on Build GRCh38 Gain NOC2L LOC100130417 HES4 FAM41C LINC01128 LOC284600 KLHL17 PLEKHN1 PERM1 SAMD11 LOC107985728
esv3584976 Chr1:733250 - 914824 on Build GRCh38 Gain LOC100287934 LOC107984841 FAM41C LINC01128 LINC00115 LOC284600 FAM87B LOC100288069

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