Product Details

Assay Reference Genome
Location

Chr.1:906834 on build GRCh38
Cytoband
1p36.33
Species
Variation Type
Copy Number

Additional Information

For this assay, SNP(s) [rs148658266] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Target Gene Details

Target Copy Number Variation Details

DGV Version
Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv4n111 Chr1:869076 - 914637 on Build GRCh38 Duplication FAM41C LOC284600
nsv1004962 Chr1:629241 - 915295 on Build GRCh38 Gain MTND2P28 LOC100288069 MIR6723 LOC100133331 MTND1P23 FAM87B OR4F16 FAM41C LOC100287934 LINC01128 LINC00115 LOC284600 LOC107984841
nsv482937 Chr1:10001 - 2368561 on Build GRCh38 Loss NOC2L CPSF3L DVL1 LOC100133331 PUSL1 TNFRSF18 CDK11A MRPL20 LOC102725121 MIR1302-2 LOC105378592 LOC102724312 LINC01128 LINC01342 LOC284600 LOC100130417 GNB1 OR4F29 KLHL17 LOC107985728 ATAD3B ANKRD65 TAS1R3 MTND1P23 FAM87B PERM1 ISG15 AGRN SLC35E2B GABRD CCNL2 PRKCZ LOC101928626 FAM132A MIR6859-2 LOC107985729 LOC105378947 LOC100506504 LOC100287934 MIR6726 SAMD11 UBE2J2 LOC105378948 LOC148413 ACAP3 SCNN1D MIR6808 MMP23A FAM138A LINC00115 CPTP NADK FAAP20 VWA1 SSU72 MXRA8 LOC100132287 MORN1 MIR6727 LOC100288175 TMEM88B RNF223 TTLL10-AS1 LOC100129534 OR4F16 LOC729737 MIR200A ATAD3A DDX11L1 CALML6 LOC105378589 LOC107984841 CDK11B LOC100288069 AURKAIP1 PLEKHN1 MIB2 MIR6723 WASH7P MMP23B SLC35E2 HES4 LOC105378949 TMEM52 MTND2P28 MIR200B ATAD3C CFAP74 LOC105378591 OR4F5 TTLL10 MIR6859-1 LOC100134822 B3GALT6 TMEM240 MIR429 FAM41C SDF4 C1orf159 FNDC10 TNFRSF4 SKI
nsv950451 Chr1:899421 - 1094520 on Build GRCh38 Deletion KLHL17 NOC2L LOC107985728 PLEKHN1 LOC100288175 PERM1 RNF223 ISG15 AGRN HES4 C1orf159 SAMD11 LOC284600 LOC100130417 LOC105378948
nsv509035 Chr1:891406 - 985724 on Build GRCh38 Insertion KLHL17 NOC2L LOC107985728 PLEKHN1 SAMD11 LOC284600 LOC100130417 PERM1
dgv1n67 Chr1:811028 - 914557 on Build GRCh38 Gain FAM41C LINC01128 LINC00115 FAM87B LOC284600
nsv1005935 Chr1:805477 - 915295 on Build GRCh38 Gain FAM41C LINC01128 LINC00115 FAM87B LOC284600
esv3584982 Chr1:837710 - 917284 on Build GRCh38 Gain FAM41C LINC01128 LOC284600 LOC100130417
nsv1009537 Chr1:841742 - 915295 on Build GRCh38 Gain FAM41C LINC01128 LOC284600
nsv428334 Chr1:874371 - 1220569 on Build GRCh38 Gain NOC2L PLEKHN1 LOC100288175 RNF223 TNFRSF18 TTLL10-AS1 HES4 LINC01342 SAMD11 LOC284600 LOC100130417 LOC105378948 MIR200B KLHL17 LOC107985728 TTLL10 PERM1 ISG15 MIR200A MIR429 AGRN FAM41C SDF4 C1orf159 TNFRSF4
nsv10161 Chr1:776731 - 1777210 on Build GRCh38 Gain+Loss MXRA8 NOC2L MIR6727 LOC100288175 TMEM88B CPSF3L DVL1 PUSL1 RNF223 TNFRSF18 CDK11A MRPL20 TTLL10-AS1 LOC102724312 LINC01128 LINC01342 LOC284600 LOC100130417 KLHL17 LOC107985728 ATAD3B ANKRD65 TAS1R3 FAM87B PERM1 ISG15 MIR200A ATAD3A AGRN SLC35E2B CCNL2 FAM132A CDK11B LOC100288069 AURKAIP1 PLEKHN1 MIB2 MMP23B LOC107985729 SLC35E2 HES4 LOC100287934 MIR6726 SAMD11 UBE2J2 LOC105378948 MIR200B ATAD3C LOC148413 TTLL10 ACAP3 B3GALT6 SCNN1D MIR6808 TMEM240 MIR429 FAM41C MMP23A SDF4 C1orf159 FNDC10 LINC00115 CPTP NADK TNFRSF4 VWA1 SSU72
dgv5n100 Chr1:585989 - 1114424 on Build GRCh38 Gain LOC100288069 NOC2L PLEKHN1 LOC100288175 MIR6723 LOC100133331 RNF223 OR4F16 LOC105378947 HES4 LOC100287934 LINC01128 SAMD11 LOC284600 LOC100130417 LOC105378948 MTND2P28 KLHL17 LOC107985728 MTND1P23 FAM87B PERM1 ISG15 AGRN FAM41C C1orf159 LOC101928626 LINC00115 LOC107984841
nsv517709 Chr1:817186 - 1275912 on Build GRCh38 Gain+Loss NOC2L PLEKHN1 LOC100288175 RNF223 TNFRSF18 TTLL10-AS1 HES4 LINC01128 LINC01342 SAMD11 LOC284600 LOC100130417 UBE2J2 LOC105378948 MIR200B KLHL17 LOC107985728 TTLL10 B3GALT6 FAM87B PERM1 ISG15 MIR200A MIR429 AGRN FAM41C SDF4 C1orf159 LINC00115 FAM132A TNFRSF4
dgv1n111 Chr1:690090 - 939522 on Build GRCh38 Duplication LOC100288069 LOC107985728 LOC100133331 FAM87B OR4F16 FAM41C LOC100287934 LINC01128 LINC00115 SAMD11 LOC284600 LOC100130417 LOC107984841
dgv3n111 Chr1:783283 - 939522 on Build GRCh38 Duplication FAM41C LOC107985728 LOC100287934 LINC01128 LINC00115 SAMD11 FAM87B LOC284600 LOC100130417
dgv2n67 Chr1:877618 - 1426500 on Build GRCh38 Gain MXRA8 NOC2L MIR6727 AURKAIP1 PLEKHN1 LOC100288175 TMEM88B CPSF3L DVL1 PUSL1 RNF223 TNFRSF18 MRPL20 TTLL10-AS1 HES4 MIR6726 LINC01342 SAMD11 LOC284600 LOC100130417 UBE2J2 LOC105378948 MIR200B KLHL17 LOC107985728 LOC148413 ANKRD65 TTLL10 ACAP3 TAS1R3 B3GALT6 PERM1 SCNN1D ISG15 MIR6808 MIR200A MIR429 AGRN CCNL2 SDF4 C1orf159 FAM132A CPTP TNFRSF4
nsv832980 Chr1:848279 - 1007037 on Build GRCh38 Gain KLHL17 FAM41C NOC2L HES4 LOC107985728 PLEKHN1 LINC01128 SAMD11 LOC284600 LOC100130417 PERM1
esv3584976 Chr1:733250 - 914824 on Build GRCh38 Gain FAM41C LOC100288069 LOC100287934 LINC01128 LINC00115 FAM87B LOC284600 LOC107984841

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