Product Details

Assay Reference Genome
Location

Chr.1:906202 on build GRCh38
Cytoband
1p36.33
Species
Variation Type
Copy Number

Additional Information

For this assay, SNP(s) [rs114464092] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Target Gene Details

Target Copy Number Variation Details

DGV Version
Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv4n111 Chr1:869076 - 914637 on Build GRCh38 Duplication LOC284600 FAM41C
nsv1004962 Chr1:629241 - 915295 on Build GRCh38 Gain MTND2P28 OR4F16 LOC107984841 LOC284600 LOC100287934 LOC100133331 MTND1P23 LINC01128 FAM87B LINC00115 FAM41C MIR6723 LOC100288069
nsv482937 Chr1:10001 - 2368561 on Build GRCh38 Loss FNDC10 OR4F16 AURKAIP1 MIR6726 UBE2J2 PRKCZ TMEM52 MIR429 NOC2L B3GALT6 FAM87B LINC01342 LOC148413 ACAP3 C1orf159 GNB1 LOC100287934 LOC101928626 ATAD3B OR4F5 GABRD MIR200B VWA1 MIR6723 LOC105378949 OR4F29 KLHL17 SCNN1D CALML6 CCNL2 LOC102724312 MIB2 CDK11B AGRN PLEKHN1 LOC100129534 TMEM240 MIR6859-2 CPSF3L CDK11A SSU72 MMP23A TAS1R3 MTND1P23 SAMD11 CPTP LOC100130417 MTND2P28 LOC100134822 MRPL20 LOC105378947 LOC284600 TNFRSF18 TMEM88B LOC107985728 LOC105378948 LOC105378592 TNFRSF4 LOC729737 LOC102725121 ANKRD65 MORN1 WASH7P SKI LOC105378591 LOC100132287 MMP23B LOC100133331 LOC100288175 MIR6808 FAM132A LINC00115 DVL1 MIR200A RNF223 LOC100288069 MIR6727 LOC100506504 NADK LOC107984841 PUSL1 MXRA8 LINC01128 PERM1 SLC35E2B MIR6859-1 SDF4 HES4 FAAP20 LOC107985729 ATAD3C SLC35E2 ISG15 CFAP74 TTLL10-AS1 FAM138A MIR1302-2 FAM41C DDX11L1 TTLL10 ATAD3A LOC105378589
nsv950451 Chr1:899421 - 1094520 on Build GRCh38 Deletion KLHL17 LOC284600 C1orf159 ISG15 LOC107985728 SAMD11 NOC2L LOC100288175 LOC105378948 PERM1 AGRN RNF223 PLEKHN1 LOC100130417 HES4
nsv509035 Chr1:891406 - 985724 on Build GRCh38 Insertion KLHL17 LOC107985728 SAMD11 NOC2L LOC284600 PERM1 PLEKHN1 LOC100130417
dgv1n67 Chr1:811028 - 914557 on Build GRCh38 Gain LINC01128 FAM87B LOC284600 LINC00115 FAM41C
nsv1005935 Chr1:805477 - 915295 on Build GRCh38 Gain LINC01128 FAM87B LOC284600 LINC00115 FAM41C
esv3584982 Chr1:837710 - 917284 on Build GRCh38 Gain LINC01128 LOC284600 FAM41C LOC100130417
nsv1009537 Chr1:841742 - 915295 on Build GRCh38 Gain LINC01128 LOC284600 FAM41C
nsv428334 Chr1:874371 - 1220569 on Build GRCh38 Gain KLHL17 LOC284600 TNFRSF18 LOC107985728 MIR429 NOC2L LOC105378948 PERM1 AGRN LINC01342 PLEKHN1 SDF4 TNFRSF4 HES4 C1orf159 ISG15 TTLL10-AS1 SAMD11 MIR200B LOC100288175 FAM41C MIR200A RNF223 TTLL10 LOC100130417
nsv10161 Chr1:776731 - 1777210 on Build GRCh38 Gain+Loss FNDC10 MRPL20 AURKAIP1 LOC284600 MIR6726 TNFRSF18 UBE2J2 TMEM88B LOC107985728 MIR429 NOC2L B3GALT6 FAM87B LOC105378948 LINC01342 TNFRSF4 LOC148413 ACAP3 C1orf159 ANKRD65 LOC100287934 ATAD3B MMP23B MIR200B VWA1 LOC100288175 MIR6808 FAM132A LINC00115 DVL1 MIR200A RNF223 LOC100288069 KLHL17 MIR6727 SCNN1D NADK PUSL1 MXRA8 CCNL2 LOC102724312 MIB2 LINC01128 CDK11B PERM1 AGRN SLC35E2B PLEKHN1 TMEM240 SDF4 CPSF3L CDK11A HES4 SSU72 LOC107985729 ATAD3C MMP23A TAS1R3 SLC35E2 ISG15 TTLL10-AS1 SAMD11 FAM41C TTLL10 CPTP LOC100130417 ATAD3A
dgv5n100 Chr1:585989 - 1114424 on Build GRCh38 Gain MTND2P28 KLHL17 OR4F16 LOC105378947 LOC107984841 LOC284600 LOC107985728 LINC01128 NOC2L FAM87B LOC105378948 PERM1 AGRN PLEKHN1 HES4 C1orf159 ISG15 LOC100287934 LOC101928626 LOC100133331 MTND1P23 SAMD11 LOC100288175 LINC00115 FAM41C MIR6723 RNF223 LOC100130417 LOC100288069
nsv517709 Chr1:817186 - 1275912 on Build GRCh38 Gain+Loss KLHL17 LOC284600 TNFRSF18 UBE2J2 LOC107985728 LINC01128 MIR429 NOC2L B3GALT6 FAM87B LOC105378948 PERM1 AGRN LINC01342 PLEKHN1 SDF4 TNFRSF4 HES4 C1orf159 ISG15 TTLL10-AS1 SAMD11 MIR200B LOC100288175 FAM132A LINC00115 FAM41C MIR200A RNF223 TTLL10 LOC100130417
dgv1n111 Chr1:690090 - 939522 on Build GRCh38 Duplication OR4F16 LOC107984841 LOC284600 LOC100287934 LOC100133331 LOC107985728 LINC01128 SAMD11 FAM87B LINC00115 FAM41C LOC100130417 LOC100288069
dgv3n111 Chr1:783283 - 939522 on Build GRCh38 Duplication LOC107985728 LINC01128 SAMD11 FAM87B LOC284600 LINC00115 FAM41C LOC100287934 LOC100130417
dgv2n67 Chr1:877618 - 1426500 on Build GRCh38 Gain KLHL17 MIR6727 MRPL20 SCNN1D AURKAIP1 PUSL1 LOC284600 MIR6726 MXRA8 TNFRSF18 UBE2J2 CCNL2 TMEM88B LOC107985728 MIR429 NOC2L B3GALT6 LOC105378948 PERM1 AGRN LINC01342 PLEKHN1 SDF4 CPSF3L TNFRSF4 HES4 LOC148413 TAS1R3 ACAP3 C1orf159 ISG15 ANKRD65 TTLL10-AS1 SAMD11 MIR200B LOC100288175 MIR6808 FAM132A DVL1 MIR200A RNF223 TTLL10 CPTP LOC100130417
nsv832980 Chr1:848279 - 1007037 on Build GRCh38 Gain KLHL17 LOC107985728 LINC01128 SAMD11 NOC2L LOC284600 PERM1 FAM41C PLEKHN1 LOC100130417 HES4
esv3584976 Chr1:733250 - 914824 on Build GRCh38 Gain LINC01128 FAM87B LOC107984841 LOC284600 LINC00115 FAM41C LOC100287934 LOC100288069

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